If you adore the warm, comforting flavor of fall in every bite, then this Apple Cinnamon Muffins Recipe will quickly become one of your all-time favorites. These muffins are perfectly spiced with cinnamon, nutmeg, and cloves, while tender chunks of fresh apple add bursts of juicy sweetness. They bake up with a golden crust topped with a delightful cinnamon sugar crunch, making each muffin a cozy little treat that feels like a hug in baked form. Whether you’re enjoying them fresh from the oven or packing them for a breakfast on the go, these Apple Cinnamon Muffins are an irresistible way to celebrate simple, wholesome ingredients.

Ingredients You’ll Need
There is something wonderfully rewarding about gathering a handful of straightforward ingredients that come together beautifully in this recipe. Each item plays a valuable role in creating the perfect balance of texture, flavor, and color that makes Apple Cinnamon Muffins so special.
- 2 cups all-purpose flour: The base that gives your muffins structure and a soft crumb.
- 1/2 cup granulated sugar: Adds just the right amount of sweetness to enhance the apples and spices.
- 2 teaspoons baking powder: Helps the muffins rise fluffy and light.
- 1/2 teaspoon baking soda: Works alongside the baking powder to give your muffins the perfect lift.
- 1/2 teaspoon salt: Balances the sweetness and enhances all the flavors.
- 1 teaspoon ground cinnamon: The star spice that infuses the muffins with that classic warmth.
- 1/2 teaspoon ground nutmeg: Adds depth and a hint of nutty sweetness to the spice blend.
- 1/4 teaspoon ground cloves: A little goes a long way in bringing complexity and warmth.
- 1/3 cup unsalted butter, melted: Keeps the muffins moist and tender with a subtle richness.
- 2 large eggs: Bind everything together and provide structure.
- 1/2 cup milk: Adds moisture and ensures a soft, delicate crumb.
- 1/4 cup plain yogurt: Adds tanginess and helps make the muffins exceptionally moist.
- 2 teaspoons vanilla extract: Enhances the muffin’s aroma and flavor complexity.
- 2 cups peeled and diced apples (about 2 medium apples): The juicy star ingredient bringing texture and freshness to every bite.
- 1 tablespoon lemon juice: Keeps the apples from browning and adds a fresh brightness.
- 1/4 cup packed brown sugar for topping: Creates a sweet, caramelized crunch on top.
- 1 teaspoon cinnamon for topping: Intensifies the flavor and adds an inviting aroma.
How to Make Apple Cinnamon Muffins Recipe
Step 1: Preheat and Prepare
Start by heating your oven to 375°F (190°C) and prepare your muffin tin. Whether you line the cups with paper or grease them lightly, this step ensures your muffins will come out easily and retain their perfect shape.
Step 2: Mix Dry Ingredients
In a large bowl, combine the all-purpose flour, granulated sugar, baking powder, baking soda, salt, ground cinnamon, nutmeg, and cloves. Mixing the spices thoroughly with the flour blend throughout your muffins delivering a consistent and aromatic flavor in every bite.
Step 3: Whisk Wet Ingredients
In a separate bowl, whisk together the melted butter, eggs, milk, yogurt, and vanilla extract until smooth and well combined. This mixture adds richness and moisture ensuring your muffins are tender and soft.
Step 4: Combine wet and dry
Pour your wet ingredients into the dry mixture and gently fold them together using a spatula or wooden spoon. Mixing just until combined is key here because overmixing can make your muffins tough. You want light and fluffy every time.
Step 5: Prepare Apples
Toss the diced apples with the lemon juice to keep them fresh and prevent browning. This small but important step keeps the vibrant apple chunks looking and tasting great in your muffins.
Step 6: Fold Apples into Batter
Gently fold the apples into the batter, distributing them evenly without breaking them down. This ensures every muffin gets those juicy apple surprises without making the batter watery.
Step 7: Fill Muffin Cups
Divide the batter among your prepared muffin cups, filling each about three quarters full. This allows enough room for them to rise perfectly without spilling over.
Step 8: Add the Cinnamon Sugar Topping
Mix the brown sugar and cinnamon for topping in a small bowl, then sprinkle this tasty mix evenly over each muffin. This forms a delicate, caramelized crust that adds texture and sweetness.
Step 9: Bake to Perfection
Bake your muffins in the oven for 18 to 22 minutes, or until a toothpick inserted in the center comes out clean. The kitchen will start to smell amazing, and your anticipation will be at an all-time high!
Step 10: Cool and Enjoy
Let the muffins cool in the pan for 5 minutes before moving them to a wire rack to cool completely. This keeps the bottoms from becoming soggy and gives you that perfect texture from edge to center.
How to Serve Apple Cinnamon Muffins Recipe

Garnishes
If you want to add a little extra flair, a light dusting of powdered sugar or a drizzle of warm honey can beautifully complement the spice and sweetness of these Apple Cinnamon Muffins. A small pat of butter melting on top fresh from the oven is always a simple and delicious touch.
Side Dishes
These muffins pair wonderfully with a hot cup of coffee or a cozy mug of tea, making them the perfect breakfast or afternoon snack. For a more filling meal, serve alongside scrambled eggs or a fresh fruit salad to balance sweetness with savory and fresh notes.
Creative Ways to Present
Try serving these muffins warm wrapped in cloth napkins in a rustic basket for a charming brunch presentation. You can also cut them in half and toast lightly with cream cheese or your favorite nut butter for a fun twist that elevates this classic snack.
Make Ahead and Storage
Storing Leftovers
Apple Cinnamon Muffins stay fresh at room temperature for up to two days when stored in an airtight container to keep them moist and tender. For longer storage, refrigeration will keep them fresh for up to five days, but allow them to come to room temperature before enjoying.
Freezing
This recipe freezes beautifully! Wrap individual muffins in plastic wrap or foil and place them in a sealed freezer bag. They’ll keep well for up to three months, making it easy to enjoy this comforting treat anytime you crave it.
Reheating
To bring frozen or refrigerated muffins back to life, just pop them in the microwave for 20 to 30 seconds or warm them in a 350°F (175°C) oven for about 10 minutes. This restores their fresh-baked warmth and flavor, almost as good as the moment they came out of the oven.
FAQs
Can I use a different type of apple in this recipe?
Absolutely! Varieties like Granny Smith, Fuji, or Honeycrisp each bring their own balance of tartness and sweetness. Just be sure to dice them uniformly so they cook evenly inside your muffins.
What if I don’t have plain yogurt?
You can substitute plain yogurt with sour cream or buttermilk to maintain the moisture and slight tang that keeps these muffins tender and flavorful.
Can I make these muffins gluten-free?
Yes! Replace the all-purpose flour with a gluten-free baking blend that can be substituted cup for cup. Make sure your baking powder is gluten-free as well for the best results.
Is it okay to skip the nutmeg and cloves?
If you prefer a milder spice profile, you can omit the nutmeg and cloves. Just keep the cinnamon as it is central to the warm flavor characteristic of this Apple Cinnamon Muffins Recipe.
How do I know when the muffins are done baking?
The best way is to insert a toothpick into the center of a muffin—it should come out clean or with just a few crumbs attached. If there is wet batter, the muffins need a few more minutes in the oven.
Final Thoughts
There is something deeply satisfying about baking a batch of Apple Cinnamon Muffins Recipe from scratch. The way those aromas fill your kitchen and the delightful balance of spices and fresh apple in each bite is pure magic. I hope you give this recipe a try and find it as comforting and delicious as I have. It’s truly one of those recipes that brightens mornings and brings a little extra joy to your day.
Print
Apple Cinnamon Muffins Recipe
- Prep Time: 15 minutes
- Cook Time: 20 minutes
- Total Time: 35 minutes
- Yield: 12 muffins
- Category: Breakfast, Snack, Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Description
Delight in these moist and flavorful Apple Cinnamon Muffins, perfectly spiced with cinnamon, nutmeg, and cloves. Made with fresh diced apples and a rich blend of wet and dry ingredients, these muffins are topped with a cinnamon-brown sugar crumble for an irresistible finish. Ideal for breakfast or a cozy snack, they bake to golden perfection in just 20 minutes.
Ingredients
Dry Ingredients
- 2 cups all-purpose flour
- 1/2 cup granulated sugar
- 2 teaspoons baking powder
- 1/2 teaspoon baking soda
- 1/2 teaspoon salt
- 1 teaspoon ground cinnamon
- 1/2 teaspoon ground nutmeg
- 1/4 teaspoon ground cloves
Wet Ingredients
- 1/3 cup unsalted butter, melted
- 2 large eggs
- 1/2 cup milk
- 1/4 cup plain yogurt
- 2 teaspoons vanilla extract
Fruit
- 2 cups peeled and diced apples (about 2 medium apples)
- 1 tablespoon lemon juice
Topping
- 1/4 cup packed brown sugar
- 1 teaspoon cinnamon
Instructions
- Preheat oven and prepare pan: Preheat your oven to 375°F (190°C). Line a muffin tin with paper liners or lightly grease it to prevent sticking.
- Mix dry ingredients: In a large bowl, combine the all-purpose flour, granulated sugar, baking powder, baking soda, salt, ground cinnamon, ground nutmeg, and ground cloves. Stir well to distribute the spices evenly.
- Whisk wet ingredients: In a separate bowl, whisk together the melted unsalted butter, eggs, milk, plain yogurt, and vanilla extract until the mixture is smooth and cohesive.
- Combine wet and dry: Pour the wet ingredients into the dry mixture. Gently fold with a spatula or wooden spoon until just combined, being careful not to overmix to keep the muffins tender.
- Prepare apples: Toss the peeled and diced apples with lemon juice to prevent browning and maintain freshness.
- Fold in apples: Carefully fold the apple pieces into the batter, ensuring they are evenly distributed throughout.
- Fill muffin cups: Spoon the batter evenly into the prepared muffin cups, filling each about 3/4 full to allow room for rising.
- Add topping: In a small bowl, mix together the brown sugar and cinnamon. Sprinkle this cinnamon-brown sugar mixture evenly over the tops of each muffin for a sweet, crunchy crust.
- Bake: Place the muffin tin in the preheated oven and bake for 18 to 22 minutes, or until a toothpick inserted into the center of a muffin comes out clean.
- Cool: Let the muffins cool in the tin for about 5 minutes to set, then transfer them to a wire rack to cool completely before serving.
Notes
- Be careful not to overmix the batter to ensure tender muffins.
- Using lemon juice on the apples prevents discoloration, keeping the muffins visually appealing.
- You can substitute plain yogurt with Greek yogurt for a richer texture.
- These muffins can be stored in an airtight container at room temperature for up to 3 days.
- For extra moisture, add a tablespoon of applesauce or increase yogurt slightly.

