If you’re looking for a cozy treat that brings autumn flavors and chocolatey goodness together without any gluten worries, these Pumpkin Chocolate Chip Muffins Gluten Free Recipe is an absolute must-try. Moist, tender, and bursting with warm spices, this recipe perfectly balances the natural sweetness of pumpkin with rich chocolate chips. Whether you’re baking for yourself, family, or friends, these muffins make for a delightful snack, breakfast, or dessert that everyone can enjoy without compromise.

Ingredients You’ll Need
Every ingredient in this Pumpkin Chocolate Chip Muffins Gluten Free Recipe plays a crucial role in creating that perfect texture, flavor, and inviting aroma. From the creamy pumpkin puree to the aromatic spices and, of course, the luscious chocolate chips, each component is simple but essential.
- 1 cup canned pumpkin puree: Gives moisture, natural sweetness, and that beautiful orange hue.
- 2 large eggs: Provide structure and richness to keep the muffins fluffy yet tender.
- 1/3 cup coconut oil, melted: Adds healthy fat and a subtle tropical note, plus keeps the muffins moist.
- 1/2 cup brown sugar: Introduces warmth and depth with its molasses notes.
- 1/4 cup granulated sugar: Balances sweetness and helps create a light crumb.
- 1 teaspoon pure vanilla extract: Elevates the flavors with a smooth, fragrant touch.
- 1 cup gluten-free all-purpose flour: The base that keeps the recipe safe for gluten-sensitive folks while maintaining a great crumb.
- 1/2 teaspoon baking powder: Gives the muffins lift and tenderness.
- 1/2 teaspoon baking soda: Reacts with the pumpkin’s natural acidity for extra rise.
- 1/4 teaspoon salt: Enhances all the sweet and spicy flavors perfectly.
- 1 teaspoon ground cinnamon: Adds classic warming spice ideal for fall baking.
- 1/2 teaspoon ground nutmeg: Offers a subtle, nutty warmth that pairs beautifully with pumpkin.
- 1/2 teaspoon ground ginger: Gives a mild zing that brightens the depth of spices.
- 1/2 cup gluten-free chocolate chips: Brings loving pockets of melty sweetness throughout every bite.
How to Make Pumpkin Chocolate Chip Muffins Gluten Free Recipe
Step 1: Prep Your Oven and Muffin Tin
First things first, heat your oven to 350°F (175°C). Prepare your muffin tin by lining it with paper liners or spraying it well with non-stick spray—this will help your muffins release easily once baked.
Step 2: Mix Wet Ingredients
In a large bowl, whisk together the pumpkin puree, eggs, melted coconut oil, brown sugar, granulated sugar, and vanilla extract until everything is smooth and well blended. This combination sets the flavorful and moist foundation for your muffins.
Step 3: Combine Dry Ingredients
In a separate bowl, sift or stir together the gluten-free flour, baking powder, baking soda, salt, cinnamon, nutmeg, and ginger. Mixing these spices with your leavening agents ensures even distribution and perfect rise every time.
Step 4: Bring Wet and Dry Together
Gradually add your dry ingredients into the wet mixture, stirring gently until just combined. Be careful not to overmix here because overworking gluten-free flour can make muffins dense—keep it light to achieve that fluffy texture.
Step 5: Fold in Chocolate Chips
Now, the best part: gently folding in the gluten-free chocolate chips. Use a spatula to delicately incorporate them so they stay evenly distributed throughout the batter.
Step 6: Fill the Muffin Cups
Divide the batter evenly among your prepared muffin cups, filling each about three-quarters full to leave room for a lovely rise during baking.
Step 7: Bake to Perfection
Bake for 18 to 20 minutes or until you can insert a toothpick and it comes out clean. This ensures your muffins are cooked through but remain tender and moist inside.
Step 8: Cool Before Enjoying
Allow the muffins to cool in the tin for about 5 minutes—this makes them easier to handle—then transfer to a wire rack to cool completely. Letting them rest brings out their full flavor and texture.
How to Serve Pumpkin Chocolate Chip Muffins Gluten Free Recipe

Garnishes
These muffins shine on their own, but a light dusting of powdered sugar or a smear of softened butter or cream cheese frosting adds a delightful finishing touch. Chopped toasted pecans or a sprinkle of cinnamon on top also make them look irresistible.
Side Dishes
Serve your muffins alongside a hot cup of coffee, chai tea, or warm apple cider for a cozy autumnal pairing. For a more substantial breakfast, plate them with fresh fruit or a yogurt parfait featuring autumn spices.
Creative Ways to Present
Why not turn these muffins into a festive brunch item? Split them and create mini breakfast sandwiches with cream cheese and sliced apples or layer them with whipped mascarpone and cinnamon sugar for a quick dessert. You can even make mini muffin pops by inserting sticks and dipping them in melted chocolate for a fun party treat.
Make Ahead and Storage
Storing Leftovers
After your Pumpkin Chocolate Chip Muffins Gluten Free Recipe has cooled completely, store them in an airtight container at room temperature for up to three days. This keeps them soft and fresh, perfect for snacking any time.
Freezing
If you want to keep them longer, these muffins freeze beautifully. Wrap each muffin individually in plastic wrap and place them in a freezer-safe bag. Freeze up to 3 months and thaw overnight in the fridge or at room temperature when ready to enjoy.
Reheating
For the best experience, reheat muffins in a microwave for 20 to 30 seconds or warm them gently in an oven at 300°F for about 10 minutes. This brings back their fresh-baked softness and releases those wonderful pumpkin spice aromas.
FAQs
Can I substitute pumpkin puree with fresh pumpkin?
Absolutely! If you have fresh pumpkin, cook it until tender and puree it for the same amount as canned. Just make sure it’s well-drained so your batter doesn’t get too wet.
What gluten-free flour works best?
A gluten-free all-purpose blend with xanthan gum included works great here. If your blend doesn’t have it, adding a little xanthan gum helps mimic the structure that gluten provides.
Can I use a different oil instead of coconut oil?
Yes! Mild oils like canola or vegetable oil will work just fine, but coconut oil adds a lovely subtle flavor that enhances the overall taste of this Pumpkin Chocolate Chip Muffins Gluten Free Recipe.
Are these muffins suitable for freezing and thawing?
Definitely! These muffins freeze well and are best thawed overnight or gently warmed before eating, so you can enjoy that fresh-out-of-the-oven feeling any time.
Can I make this recipe dairy-free?
This recipe is naturally dairy-free if you use dairy-free chocolate chips. Double-check the chocolate chip ingredients to keep it allergy-friendly.
Final Thoughts
These Pumpkin Chocolate Chip Muffins Gluten Free Recipe are a true joy to make and eat, delivering fall flavors and chocolatey bliss in every bite. Whether for breakfast, a midday pick-me-up, or a festive snack, this recipe is sure to become one you reach for again and again. I can’t wait for you to try it and share that warm, cozy feeling it brings along with every muffin.
Print
Pumpkin Chocolate Chip Muffins Gluten Free Recipe
- Prep Time: 15 minutes
- Cook Time: 20 minutes
- Total Time: 35 minutes
- Yield: 12 muffins
- Category: Breakfast, Snack, Dessert
- Method: Baking
- Cuisine: American
- Diet: Gluten Free
Description
These Pumpkin Chocolate Chip Muffins are a delicious gluten-free treat perfect for fall or any time you crave a cozy, spiced snack. Made with pumpkin puree and warm spices, combined with melty gluten-free chocolate chips, these muffins offer a moist, flavorful bite with a tender crumb. They are quick to prepare and baked to perfection, making them ideal for breakfast, dessert, or an afternoon pick-me-up.
Ingredients
Wet Ingredients
- 1 cup canned pumpkin puree
- 2 large eggs
- 1/3 cup coconut oil, melted
- 1/2 cup brown sugar
- 1/4 cup granulated sugar
- 1 teaspoon pure vanilla extract
Dry Ingredients
- 1 cup gluten-free all-purpose flour
- 1/2 teaspoon baking powder
- 1/2 teaspoon baking soda
- 1/4 teaspoon salt
- 1 teaspoon ground cinnamon
- 1/2 teaspoon ground nutmeg
- 1/2 teaspoon ground ginger
Additional
- 1/2 cup gluten-free chocolate chips
Instructions
- Preheat Oven and Prepare Pan: Preheat your oven to 350°F (175°C). Line a 12-cup muffin tin with paper liners or grease it with non-stick spray to prevent sticking.
- Mix Wet Ingredients: In a large mixing bowl, whisk together the pumpkin puree, eggs, melted coconut oil, brown sugar, granulated sugar, and vanilla extract until the mixture is smooth and well combined.
- Combine Dry Ingredients: In a separate bowl, combine the gluten-free all-purpose flour, baking powder, baking soda, salt, cinnamon, nutmeg, and ginger thoroughly to distribute the leavening agents and spices evenly.
- Combine Wet and Dry: Gradually add the dry ingredients into the wet ingredients, stirring gently until just combined. Avoid overmixing to ensure the muffins remain light and fluffy.
- Fold in Chocolate Chips: Carefully fold the gluten-free chocolate chips into the batter using a spatula to spread them evenly without deflating the batter.
- Fill Muffin Cups: Divide the batter evenly among the prepared muffin cups, filling each about three-quarters full to allow room for rising.
- Bake the Muffins: Bake the muffins for 18 to 20 minutes or until a toothpick inserted into the center comes out clean, indicating they are fully cooked.
- Cool Down: Let the muffins cool in the tin for about 5 minutes to firm up, then transfer them to a wire rack to cool completely before serving.
Notes
- For best texture, do not overmix the batter as it can make the muffins dense.
- You can substitute the coconut oil with melted butter or another neutral oil if preferred.
- Ensure your gluten-free flour blend contains xanthan gum or a similar binder for proper texture.
- Store muffins in an airtight container at room temperature for up to 3 days, or freeze for longer storage.
- To make these muffins vegan, substitute eggs with flax eggs and ensure the chocolate chips are dairy-free.

